4. Day 4: NBRA-NA-MD workflow for atomistic systems
Overview
Teaching: min
Exercises: minQuestions
Objectives
1. Day info
- July 11, 2024, Thursday
- Where: Natural Sciences Complex 220
- Instructors: Mohammad Shakiba, Qingxin Zhang, Alexey Akimov
2. TSH for atomistic systems (NBRA NA-MD workflow)
2.1. NA-MD calculations for atomistic system: the overview and NA-MD dynamics (step 4)
Links:
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Complete these tutorials:
2.2. Conducting electronic structure calculation with CP2K. Demo and Hands on. (60 min)
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Complete this tutorial:
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Tasks:
- Generate molecular dynamics trajectory for a periodic or nonperiodic system
2.3. NBRA NA-MD workflow with Libra/CP2K interface (steps 2 and 3) with DFT and xTB. Demo and Hands on (90 min)
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Complete these tutorials:
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Tasks:
- compute overlaps and time-overlaps in the KS and excited sates basis
2.4. Analyzing the dynamics results and computing the timescales. Demo and Hands on (60 min)
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Complete these tutorials:
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Tasks:
- analyze the results of the dynamics by fitting them to an exponential function
2.5. Known pitfalls. Lecture and discussion. (30 min)
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Complete these tutorials:
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Tasks:
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compute the time-overlaps of <GS(t) GS(t+\Delta t)> and <S_i(t) S_i(t+\Delta t)>
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3. Videorecordings
3.1. UB recording:
3.2. Zoom recordings:
Key Points